PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g23136.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 121aa    MW: 13064.9 Da    PI: 9.0512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g23136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-052546122
                      EEETTTTEEESSHHHHHHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                      +kCp+C+++Fs++  L  H+++
  Bradi2g23136.1.p 25 FKCPYCSEVFSTHQALGGHMSK 46
                      89*****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.5E-82545IPR007087Zinc finger, C2H2
PROSITE profilePS501578.5592559IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAAPNGSTLN LCRSSASSCS RGRGFKCPYC SEVFSTHQAL GGHMSKRTCI DEPHRYQLPP  60
LPPTILPASP ILGALPTWLA PNPYFWEEYR RGGRRPVEIN FLGIPRSPDL VPANGNVSGT  120
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-